CellSet 

CellSeT is a tool to segment and analyse confocal microscope images.

CellSeT can be used to analyse confocal images of plant cells. Image analysis algorithms are used to extract the network structure of the visible cells. This information is then used to perform quantitative analysis of the cell structure, and guide additional analysis through the use of an extensible plug-in system, which allows processes to be applied to individual and groups of cells. Plug-ins have been written for a variety of tasks, e.g. estimating the amount of a marker protein in a cell. CellSeT is written in C# .NET, and as such runs only on Windows machines with an up-to-date version of the .NET framework installed. Plug-ins can be written in any .NET compatible language, such as C# or VB. For users who do not have access to a Windows machine, we have successfully used CellSeT in a virtual windows environment.